protocols

coming soon…

Pipelines and workflows from the lab:

kmerRRR: k-mer-based tool for functional genomics in repeat rich regions https://github.com/LarracuenteLab/kmerRRR

-Rahmat, J., Pham, T., and A.M. Larracuente. 2026. kmerRRR: A k-mer based tool for functional genomics in Repeat Rich Regions. BioRxiv 2026.06.21.732238. https://doi.org/10.64898/2026.06.21.732238

RepeatProfiler: a tool for studying repetitive DNA dynamics using low-coverage, short-read data (John Sproul lab https://biology.byu.edu/sproul-lab, Larracuente lab alumni) https://github.com/johnssproul/RepeatProfiler

-Negm, S.; Greenberg, A.D.; Larracuente, A.M.; Sproul, J.S. (2020) RepeatProfiler: a pipeline for visualization and comparative analysis of repetitive DNA profiles. https://doi.org/10.1111/1755-0998.13305